GEO Data Sources¶
Biolearn supports a number of useful DNA methylation data sets from GEO
ID |
Title |
Format |
Samples |
Age Present |
Sex Present |
|---|---|---|---|---|---|
FACS validation dataset: An optimized library for reference-… |
IlluminaEPIC |
6 |
Yes |
Yes |
|
FlowSorted.Blood.EPIC: An optimized library for reference-ba… |
IlluminaEPIC |
49 |
Yes |
Yes |
|
Genome-wide Methylation Profiles Reveal Quantitative Views o… |
Illumina450k |
656 |
Yes |
Yes |
|
Genome wide DNA methylation profiling of United Kingdom Ovar… |
Illumina27k |
540 |
Yes |
No |
|
Methylome Analysis and Epigenetic Changes Associated with Me… |
Illumina450k |
329 |
Yes |
Yes |
|
Differential DNA methylation in Rheumatoid arthritis |
Illumina450k |
689 |
Yes |
Yes |
|
Blood DNA methylation profiles in a Dutch population |
Illumina450k |
95 |
Yes |
Yes |
|
EPIC-Italy at HuGeF |
Illumina450k |
845 |
Yes |
Yes |
|
Many obesity-associated SNPs strongly associate with DNA met… |
Illumina450k |
355 |
Yes |
Yes |
|
Aging-associated DNA methylation changes in middle-aged indi… |
Illumina450k |
184 |
Yes |
No |
|
Methylation Profiling of Blood DNA from Healthy Children |
Illumina450k |
192 |
No |
No |
|
DNA methylation profiles of human blood samples from a sever… |
Illumina450k |
113 |
Yes |
Yes |
|
DNA methylomes of Newborns and Nonagenarians |
Illumina450k |
40 |
Yes |
No |
|
Identification of a DNA methylation signature in blood from … |
Illumina450k |
87 |
Yes |
Yes |
|
Methylation data from stored peripheral blood leukocytes fro… |
Illumina450k |
946 |
Yes |
Yes |
|
DNA Methylation (EPIC) from the Grady Trauma Project |
IlluminaEPIC |
795 |
Yes |
Yes |
|
RNASeq whole blood of Dutch 500FG cohort |
IlluminaHiSeq2500 |
100 |
Yes |
Yes |
|
Deep sequencing of endogenous mRNA from Homo sapiens from fo… |
IlluminaHiSeq2500 |
62 |
No |
No |
|
2024 Biomarkers of Aging Challenge Sample Data |
IlluminaEPIC |
500 |
Yes |
Yes |
|
FlowSorted.BloodExtended.EPIC: An Enhanced DNA Methylation L… |
IlluminaEPIC |
68 |
Yes |
No |
|
CD4T and CD8T naive and memory validation dataset: An Enhanc… |
IlluminaEPIC |
76 |
Yes |
Yes |
|
Umbilical cord blood artificial mixtures validation dataset:… |
IlluminaEPIC |
12 |
No |
No |
|
12-cell-type artificial mixtures validation dataset: An Enha… |
IlluminaEPIC |
12 |
No |
No |
|
Differential DNA methylation in Multiple Sclerosis |
Illumina450k |
279 |
Yes |
Yes |
|
Genome-wide DNA methylation analysis in peripheral blood of … |
Illumina450k |
34 |
Yes |
Yes |
|
Inflammatory Cytokines shape a Changing DNA Methylome in Mon… |
IlluminaEPIC |
64 |
Yes |
Yes |
|
Genome-wide DNA methylation analysis of peripheral blood sam… |
Illumina450k |
70 |
Yes |
Yes |
|
DNA Methylation Differences Associated with Social Anxiety D… |
IlluminaEPIC |
143 |
Yes |
Yes |
|
Trait related and differential DNA Methylation in obese and … |
Illumina450k |
32 |
Yes |
Yes |
|
Human Aging-associated DNA Hypermethylation Occurs Preferent… |
Illumina27k |
93 |
Yes |
Yes |
|
DNA methylation in peripheral blood from individuals with Cr… |
Illumina450k |
48 |
Yes |
Yes |
|
Aging effects on DNA methylation modules in blood tissue |
Illumina27K |
720 |
Yes |
Yes |
|
Differential DNA methylation with age displays both common a… |
Illumina27K |
71 |
Yes |
Yes |
|
Cigarette Smoking Reduces DNA Methylation Levels at Multiple… |
Illumina450k |
464 |
Yes |
Yes |
|
An Epigenetic Signature in Peripheral Blood Associated with … |
Illumina450k |
384 |
Yes |
Yes |
|
Whole blood DNA methylation samples from HIV positive men [2… |
Illumina450k |
120 |
Yes |
Yes |
|
Methylome-wide analysis of chronic HIV infected patients and… |
Illumina450k |
284 |
Yes |
Yes |
|
Blood Illumina Inf 450 DNA methylation samples from HIV+ and… |
Illumina450k |
92 |
Yes |
Yes |
|
Genome-wide DNA methylation levels and altered cortisol stre… |
Illumina450k |
85 |
Yes |
Yes |
|
Epigenetic patterns with aging and exercise are associated w… |
Illumina450K |
38 |
Yes |
Yes |
|
Epigenome-Wide Methylation Profile in sustemic lupus erythem… |
Illumina450k |
90 |
Yes |
No |
|
Primary osteoporosis is not reflected by disease-specific DN… |
Illumina450k |
48 |
Yes |
Yes |
|
Longitudinal Olink Serum Proteomics COVID-19 |
Olink1500 |
159 |
No |
No |
|
Longitudinal Olink Plasma Proteomics COVID-19 |
Olink1500 |
256 |
No |
No |
|
Filbin Lab Olink Plasma Proteomics |
Olink1500 |
386 |
No |
No |