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  • Quickstart
  • Clocks and Other Models
  • GEO Data Sources
  • DNA Methylation Array Data Standard V-2410
  • Examples
    • Omics Biomarker Examples
      • “Transcriptomic Clock” using GEO Data
      • “Epigenetic Clocks” in GEO Data
      • Down Syndrome Epigenetic Plotting
      • Performing custom imputations
    • Composite Biomarkers Examples
      • “Phenotypic Ages” in NHANES Data
    • Challenge Submission Examples
      • Building a competition submission using an existing model
      • Exploring the Challenge Data
      • Training an ElasticNet model
    • Deconvolution Examples
      • “Deconvolution Example”
  • API References
    • biolearn.data_library: DataLibrary
      • biolearn.data_library.DataLibrary
      • biolearn.data_library.DataSource
      • biolearn.data_library.GeoData
    • biolearn.model_gallery: ModelGallery
      • biolearn.model_gallery.ModelGallery
    • biolearn.cache: Cache
      • biolearn.cache.NoCache
      • biolearn.cache.LocalFolderCache
    • biolearn.imputation: Data Imputation Utilities
      • biolearn.imputation.impute_from_standard
      • biolearn.imputation.impute_from_average
      • biolearn.imputation.hybrid_impute
    • biolearn.load: Data Loading Utilities
      • biolearn.load.load_nhanes
      • biolearn.load.load_fhs

Development

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Omics Biomarker Examples#

Plots results of running omics based biomarker models functions. Includes methylation and transcriptomic data.

“Transcriptomic Clock” using GEO Data

"Transcriptomic Clock" using GEO Data

“Epigenetic Clocks” in GEO Data

"Epigenetic Clocks" in GEO Data

Down Syndrome Epigenetic Plotting

Down Syndrome Epigenetic Plotting

Performing custom imputations

Performing custom imputations
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“Transcriptomic Clock” using GEO Data
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