Examples

Warning

If you want to run the examples, make sure you execute them in a directory where you have write permissions, or you copy the examples into such a directory. If you install biolean manually, make sure you have followed the instructions.

Omics Biomarker Examples

Plots results of running omics based biomarker models functions. Includes methylation and transcriptomic data.

“Transcriptomic Clock” using GEO Data

"Transcriptomic Clock" using GEO Data

“Epigenetic Clocks” in GEO Data

"Epigenetic Clocks" in GEO Data

Down Syndrome Epigenetic Plotting

Down Syndrome Epigenetic Plotting

Performing custom imputations

Performing custom imputations

Composite Biomarkers Examples

Plot survival curves based on clocks using data from standard blood tests

“Phenotypic Ages” in NHANES Data

"Phenotypic Ages" in NHANES Data

Challenge Submission Examples

Generate submissions for the biomarkers of aging challenge

Building a competition submission using an existing model

Building a competition submission using an existing model

Training an ElasticNet model

Training an ElasticNet model

Deconvolution Examples

Plots results of running deconvolution on dataset with known cell proportions

“Deconvolution Example”

"Deconvolution Example"