Clocks and Other Models

Biolearn supports a number of clock models that can be easily run from the clock gallery. IP and usage information is provided here.

Name	Year	Species	Tissue	Predicts	Source	Coefficients
Horvathv1	2013	Human	Multi-tissue	Age (Years)	paper	coefficients file
Hannum	2013	Human	Blood	Age (Years)	paper	coefficients file
Lin	2016	Human	Blood	Age (Years)	paper	coefficients file
PhenoAge	2018	Human	Blood	Age (Years)	paper	coefficients file
YingCausAge	2022	Human	Blood	Age (Years)	paper	coefficients file
YingDamAge	2022	Human	Blood	Age (Years)	paper	coefficients file
YingAdaptAge	2022	Human	Blood	Age (Years)	paper	coefficients file
Horvathv2	2018	Human	Skin + blood	Age (Years)	paper	coefficients file
PEDBE	2019	Human	Buccal	Age (Years)	paper	coefficients file
Zhang_10	2019	Human	Blood	Mortality Risk	paper	coefficients file
DunedinPoAm38	2020	Human	Blood	Aging Rate (Years/Year)	paper	coefficients file
DunedinPACE	2022	Human	Blood	Aging Rate (Years/Year)	paper	coefficients file
GrimAgeV1	2019	Human	Blood	Mortality Adjusted Age (Years)	paper	coefficients file
GrimAgeV2	2022	Human	Blood	Mortality Adjusted Age (Years)	paper	coefficients file
AlcoholMcCartney	2018	Human	Blood	Alcohol Consumption	paper	coefficients file
DNAmTL	2019	Human	Blood, Adipose	Telomere Length	paper	coefficients file
HRSInCHPhenoAge	2022	Human	Blood	Age (Years)	paper	coefficients file
Knight	2016	Human	Cord Blood	Gestational Age	paper	coefficients file
LeeControl	2019	Human	Placenta	Gestational Age	paper	coefficients file
SexEstimation	2021	Human	Blood	Sex	paper	coefficients file
LeeRefinedRobust	2019	Human	Placenta	Gestational Age	paper	coefficients file
LeeRobust	2019	Human	Placenta	Gestational Age	paper	coefficients file
SmokingMcCartney	2018	Human	Blood	Smoking Status	paper	coefficients file
DownSyndrome	2021	Human	Blood	Down Syndrome Prediction	paper	coefficients file
DeconvoluteBlood450K	2024	Human	Blood	Cell Proportions	paper	coefficients file
DeconvoluteBloodEPIC	2024	Human	Blood	Cell Proportions	paper	coefficients file
TwelveCellDeconvoluteBloodEPIC	2024	Human	Blood	Cell Proportions	paper	coefficients file
BMI_McCartney	2018	Human	Blood	BMI	paper	coefficients file
EducationMcCartney	2018	Human	Blood	Educational Attainment	paper	coefficients file
TotalCholesterolMcCartney	2018	Human	Blood	Total Cholesterol	paper	coefficients file
HDLCholesterolMcCartney	2018	Human	Blood	HDL Cholesterol	paper	coefficients file
LDLCholesterolMcCartney	2018	Human	Blood	LDL with Remnant Cholesterol	paper	coefficients file
BodyFatMcCartney	2018	Human	Blood	Percentage Body Fat	paper	coefficients file
BMI_Reed	2020	Human	Blood	BMI	paper	coefficients file
ProstateCancerKirby	2017	Human	Prostate	Prostate Cancer Status	paper	coefficients file
HepatoXu	2017	Human	Circulating DNA	Hepatocellular Carcinoma Status	paper	coefficients file
CVD_Westerman	2020	Human	Blood	Coronary Heart Disease Status	paper	coefficients file
AD_Bahado-Singh	2021	Human	Blood	Alzheimer’s Disease Status	paper	coefficients file
DepressionBarbu	2021	Human	Blood	Depression Risk	paper	coefficients file
TranscriptomicPredictionModel	2015	Human	Blood	Age (Years)	paper	coefficients file